PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0587s0006.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 211aa    MW: 23472.3 Da    PI: 6.5114
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0587s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-163483356
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         y+GVr ++ +g+Wv+eIr p++   + r++lg+f  ae+Aa+a++ a  +++g+
  Kalax.0587s0006.1.p 34 YRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTFPNAEMAARAHDVASFAFKGH 83
                         9****998.**********843...6********************99888775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-113283IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-213391IPR016177DNA-binding domain
PROSITE profilePS5103222.513390IPR001471AP2/ERF domain
SMARTSM003808.1E-343396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-313391IPR001471AP2/ERF domain
CDDcd000181.33E-303492No hitNo description
PRINTSPR003674.3E-103445IPR001471AP2/ERF domain
PRINTSPR003674.3E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAECDGQQPS SSNDLRPKVE KKKGGRSHEE RPAYRGVRMR SWGKWVSEIR QPRKKSRIWL  60
GTFPNAEMAA RAHDVASFAF KGHSAHLNFP HLITCLPRPA SLLPSHIRAA ASKAAAMIHP  120
GSDPADALSD DADKESEQGS YWNEMGASSE LVELPSLLAQ SEASGQDVQS RESVVAMEWR  180
PDQCWFWGDM PDIDWFVHVD QNRLPDINVV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-143490360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-143490663ATERF1
3gcc_A2e-143490663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426907.12e-44hypothetical protein CICLE_v10027587mg
TrEMBLV4SHT92e-44V4SHT9_9R
STRINGBra034535.1-P2e-42(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.18e-39ERF family protein